Nuclearporecomplexes

generate_nup96_positions(ring_diameter=107.0, molecule_spacing=12.0, ring_spacing=50.0)

Generate the 3D coordinates of Nup96 proteins in the nuclear pore complex.

Parameters:

ring_diameter : float Diameter of the main ring in nanometers (default: 107.0 nm) molecule_spacing : float Distance between two Nup96 molecules within same section (default: 12.0 nm) ring_spacing : float Distance between nuclear and cytoplasmic rings in z-direction (default: 50.0 nm)

Returns:

numpy.ndarray Array of shape (32, 3) containing x, y, z coordinates for all Nup96 proteins in um First 32 coordinates are the main structural Nup96 (16 nuclear, 16 cytoplasmic)